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      Events

      Announcement:

      Workflow4experimenters (W4E) course 2021: pre-registration

      We are happy to announce the next Workflow4Experimenters (W4E) international course 2021: Using Galaxy and the Workflow4metabolomics infrastructure to analyse your own metabolomics data.

      Please save the date: 11-15 October 2021 at "UMR Toxalim INRAE", Toulouse - France

      For more information: Workflow4Experimenters (W4E) international course 2021

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      EBI-W4M training: Introduction to Metabolomics Analysis

      This course will provide an introduction to metabolomics data analysis. It will focus on Liquid Chromatography – Mass Spectrometry techniques and will encompass a combination of lectures and practical sessions covering principles of experimental design, data standards and analysis. Participants will learn about data sharing of metabolomics data with the EMBL-EBI’s MetaboLights repository. Practicals will explore each stage of data analysis using training datasets and use freely-available metabolomics tools accessed through the Workflow4Metabolomics platform. The content will allow participants to create their own open-source analysis workflows to process LC-MS data based on the examples used during the course. This course is aimed at scientists new to the field of metabolomics who want to gain insights into the data analysis process. The course assumes little prior knowledge of using bioinformatics tools and the workflow platform covered will allow a wide-range of backgrounds to access the practical content. Ideal applicants will be those wanting to include metabolite profiling in their current research, either as they move into the field or in addition to other -omics data work they are currently engaged in.


      Date: Monday 30 March - Thursday 2 April 2020
      Venue: European Bioinformatics Institute (EMBL-EBI) - Wellcome Genome Campus, Hinxton, Cambridge,? CB10 1SD, United Kingdom
      Application opens: Monday 23 September 2019
      Application deadline: Friday 29 November 2019
      Participation: Open application with selection / * * * Infos & Registration * * *
      Contact: Meredith Willmott - Franck Giacomoni
      Registration fee: ?650 - Including meals and accommodation

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      Last W4E editions:

      Workflow4Experimenters (W4E) international course 2020: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data - Brussels

      Workflow4Experimenters (W4E) international course 2018: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data - Paris

      Workflow4Experimenters (W4E) european course 2017: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data - Paris

      Workflow4Experimenters (W4E) international course 2016: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data - Roscoff

      Workflow4Experimenters (W4E) course 2015: Traitement des données métabolomiques sur l'infrastructure online Workflow4Metabolomics - Roscoff

      Workflow4Experimenters (W4E) course 2014: Initiation au traitement et à l'analyse des données métabolomiques sur la plateforme scientifique web Galaxy IFB-MetaboHUB - Lyon

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      W4M at Conferences

      Galaxy Conf Comm 2019 Fribourg, Germany

      Talk: "Workflow4metabolomics an international computing infrastructure for metabolomics" - Lecorguillé, G., Pétéra, M.

      Training: - "Metabolomics data analysis I" - Lecorguillé, G., Pétéra, M.

      Metabolomics 2019 The Hague, NDL

      Workshop:? Metabolomics data processing with Introduction to the Galaxy platform W4M including general data pre-processing principles (Dr. Dara Daygon, Dr. Yann Guitton)

      Practical: Workflow4Metabolomics as a tool for metabolomics data processing (Yann Guitton)

      ?ELIXIR Galaxy Conference 2018 ?Fribourg, Germany ?Talk: "W4M: Toward an international computing infrastructure and a tools showcase for Metabolomics" - Lecorguillé, G., Giacomoni, F., Caron,C.
      Galaxy Conference Community 2017 Montpellier, France Talk: "W4M: Toward an international computing infrastructure and a tools showcase for Metabolomics" - Lecorguillé, G., Giacomoni, F., Caron,C.

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      W4M Training

      Coming soon:

      Date Place Training
      15-19/03/2021 Sète, France Chemomics : 2eme Ecole technique mixte chimiométrie-métabolomique - Bar camp ChemFlow/W4M
      11-15/10/2021 Toulouse, France Workflow4experimenters (W4E) course 2021

      Past:

      Date Place Training
      05-06/11/2020 Breda, NDL Avans Galaxy workshop - Y Guitton provide one presentation of W4M during Day 2 - Introduction of to XCMS, Analyzing LC-MS data with Galaxy by XCMS functions
      18-22/11/2019 Sète, France Chemomix : 1ere Ecole technique mixte chimiométrie-métabolomique - Bar camp ChemFlow/W4M
      21/01/2020 Toulouse, France Interactive tutorial, How to process LC-MS data with workflow4metabolomics.org - European RFMF Metabomeeting 2020 - Y Guitton, M. Tremblay-Franco, F. Giacomoni
      16-21/06/2019 St Etienne, France ETEC 2019 - Approches "Omiques" en ecologie chimique - Atelier Metabolomique avec W4M - B. Dieme
      21-23/03/2018 EBI - UK We host on our Infrastructure a training session (3 courses) and E. Thévenot provide one of these course
      11-15/09/2017 Pula, Italy Workflow4Metabolomics participates to CloudMET 2017, the 1st scientific school on Cloud-based Metabolomics Data Analysis and Collaboration.
      12-15/06/2017 Lausanne, Switzerland Metabolomics: from data to publication, Speaker Yann Guitton (LC-MS data pre-processing/MS data processing)
      6-9/06/2017 Paris, France Applications de R pour l’analyse de données spectroscopiques SM et RMN : XCMS et Batman. Alain PARIS (Muséum d'Histoire Naturelle)
      29/05-02/06/2017 Paris, France Workflow4Experimenters (W4E) international course 2017: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data.
      Keynote speakers:?Tim Ebbels (Imperial College), Steffen Neumann (IPB Halle) and Ralf Weber (Birmingham University).
      28-02/12/2016 Roscoff, France Workflow4Experimenters (W4E) course 2016: Using Galaxy and the Workflow4metabolomics infrastructure to analyse metabolomics data
      08/11/2016 Toulouse, France Master in Structural and Functional Biology (Univ P. Sabatier) - Introduction to Statistics for Metabolomics and Proteomics - Marie Tremblay-Franco
      12-16/09/2106 Sardenia, Italya 2nd Metabolomics Sardinian Scientific School: How to bridge metabolomics and genomics - The Workflow4Metabolomics (W4M) online infrastructure for omics analysis with Galaxy [PDF]
      27/11/2015 Tours, France Atelier "Analyses multivariées des données métabolomiques" dans le cadre du workshop "Pharmaco-métabolomique et recherche de nouveaux biomarqueurs en onco-pharmacologie"
      21-25/09/2015 Roscoff, France Ecole-chercheurs : Traitement des données métabolomiques sur l'infrastructure online Workflow4Metabolomics
      19/05/2014 RFMF / Lyon,France Workshop: Initiation au traitement et à l'Analyse des données métabolomiques
      19-20/03/2014 Clermont, France Galaxy pour l'analyse de données métabolomique
      12-14/03/2014 Roscoff, France Galaxy for developper
      28/01/2014 Roscoff, France Galaxy pour l'analyse de données métabolomique

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      Partners Training

      DATE PLACE TRAINING
      08, 09 and 10th november, 2016 Facultad de Agronomía, Montevideo, Uruguay Master in Nutrition - Metabolomics as a tool for nutritional research - Dr S. Polakof
      26 - 29 September, 2016 Lyon, France Nutrition périnatale : Enjeux et conséquences pour l’alimentation humaine et les pratiques d’élevage - Dr N. Cabaton, JP Antignac, MC Alexandre
      26 November, 2015 Camberra, Australia Training in NMR data analysis

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